MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-12072

Family name MIR-12072 (all species)
Seed GGGCUGC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-12072
Paralogues
Orthologues
Node of Origin (locus) C. porcellus
Node of Origin (family) C. porcellus
Genome context
(cavPor3)
scaffold_17: 14952640-14952698 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-12072)
Mir-218-P4 scaffold_17: 14934416-14934479 [-] UCSC
Mir-12072 scaffold_17: 14952640-14952698 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UGCCUCUGGGACAGCCUGCCCCUCCGGCCCUGGGCUGCCCUUGCCUGACUCUGUCUCACUGAUGAGGAGAAAGGAUGAGGCAGGCCAAGGAAGGAGGUGGCCCAAGAUGCACCCAGUAC
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Structure
        10         20         30        40        50         
UGCCUCUGGGACAGCCU-   -|    GG  C   G     CUUG   GA    GUCUCA 
                  GCC CCUCC  CC UGG CUGCC    CCU  CUCU      \
                  CGG GGAGG  GG ACC GACGG    GGA  GAGG      C
CAUGACCCACGUAGAACC   U^    AA  A   G     AGUA   AA    AGUAGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-12072_5p

mirBase accessionMIMAT0047445
Sequence
0- UGGGCUGCCCUUGCCUGACUCU -22
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Star sequence

Cpo-Mir-12072_3p*

mirBase accessionMIMAT0047446
Sequence
37- AGAAAGGAUGAGGCAGGCCAAG -59
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