MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-12073

Family name MIR-12073 (all species)
Seed UCAGAGU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-12073
Paralogues
Orthologues
Node of Origin (locus) C. porcellus
Node of Origin (family) C. porcellus
Genome context
(cavPor3)
scaffold_111: 952329-952402 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-12073)
Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC
Precursor
(pre-Mir +30nt flank)
ACCCUGCUCUGAGAAGUUGUCACUCUCAGAUUCAGAGUCGCUUGUCUCAUCCCGGGGGCAACCCCUUGUGGCUAAGAACAGGAUGGGACGCGCAACUCUGUUUCUGAAGGCUCUCUGGUUGUAGCAGCUCAUGA
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Structure
        10        20          30        40        50        60      
ACCCUGCUCUGAGAAGUUGUCA--|UC     UU      C  U          CGGGGGCAACCCC 
                        C  UCAGA  CAGAGU GC UGUCUCAUCC             U
                        G  AGUCU  GUCUCA CG GCAGGGUAGG             U
AGUACUCGACGAUGUUGGUCUCUC^GA     UU      A  C          ACAAGAAUCGGUG 
  130       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-12073_5p

mirBase accessionMIMAT0047447
Sequence
0- UUCAGAGUCGCUUGUCUCAUCC -22
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Star sequence

Cpo-Mir-12073_3p*

mirBase accessionMIMAT0047448
Sequence
52- AUGGGACGCGCAACUCUGUUUC -74
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