MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-370

Family name MIR-370 (all species)
Seed CCUGCUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-370
Paralogues
Orthologues Bta-Mir-370  Cfa-Mir-370  Cja-Mir-370  Eca-Mir-370  Hsa-Mir-370  Mml-Mir-370  Mmr-Mir-370  Mmu-Mir-370  Ocu-Mir-370  Pab-Mir-370  Rno-Mir-370 
Node of Origin (locus) Boreoeutheria
Node of Origin (family) Boreoeutheria
Genome context
(cavPor3)
scaffold_111: 977812-977869 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-370)
Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCGUGCAAGUCGGGGUACAAGAUAGAGAGGCCAGGUCACGUCUCUGCAGUUACACAGCUCAUGAGUGCCUGCUGGGGUGGAACCUGGUCUGUCUGUCUGUCAAGCACCACAGCUCGGG
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Structure
        10         20        30        40        50         
UCGUGCAAGUCGGGGUACA-|      G         CA GU   U    U   ACAGC 
                    AGAUAGA AGGCCAGGU  C  CUC GCAG UAC     \
                    UCUGUCU UCUGGUCCA  G  GGG CGUC GUG     U
GGGCUCGACACCACGAACUG^      G         AG UG   U    C   AGUAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-370_5p*

mirBase accessionMIMAT0047201
Sequence
0- CCAGGUCACGUCUCUGCAGUUAC -23
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Mature sequence

Cpo-Mir-370_3p

mirBase accessionMIMAT0047202
Sequence
36- GCCUGCUGGGGUGGAACCUGGU -58
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