MirGeneDB ID | Cja-Mir-370 |
Family name |
MIR-370 (all species) |
Seed |
CCUGCUG |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-370
Cfa-Mir-370
Cpo-Mir-370
Eca-Mir-370
Hsa-Mir-370
Mml-Mir-370
Mmr-Mir-370
Mmu-Mir-370
Ocu-Mir-370
Pab-Mir-370
Rno-Mir-370
|
Node of Origin (locus) |
Euarchontoglires
|
Node of Origin (family) |
Boreoeutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131718304-131718360 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUACAAGUCGGGGCACAAGACAGAGAAGCCAGGUCACGUCUCUGCAGUUACACAGCUCACGAGUGCCUGCUGGGGUGGAACCUGGUCUGUCUGUCUGUCUAACACCAGAGCUGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGUACAAGUCGGGGCACA--| GA - CA GU U U ACAGC
AGACAGA AG CCAGGU C CUC GCAG UAC \
UCUGUCU UC GGUCCA G GGG CGUC GUG U
GUCGUCGAGACCACAAUCUG^ G- U AG UG U C AGCAC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cja-Mir-370_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAGGUCACGUCUCUGCAGUUAC -22
Get sequence
|
Mature sequence |
Cja-Mir-370_3p (predicted) |
mirBase accession | None |
Sequence |
35- GCCUGCUGGGGUGGAACCUGGU -57
Get sequence
|