MirGeneDB ID | Pab-Mir-370 |
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Family name | MIR-370 (all species) |
Seed | CCUGCUG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-370 Cfa-Mir-370 Cja-Mir-370 Cpo-Mir-370 Eca-Mir-370 Hsa-Mir-370 Mml-Mir-370 Mmr-Mir-370 Mmu-Mir-370 Ocu-Mir-370 Rno-Mir-370 |
Node of Origin (locus) | Boreoeutheria |
Node of Origin (family) | Boreoeutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105337141-105337197 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CGUACAAGUCGGGGCACAAGACAGAGAAGCCAGGUCACGUCUCUGCAGUUACACAGCUCACGAGUGCCUGCUGGGGUGGAACCUGGUCUGUCUGUCUGUCUAACACCAGAGCUCGGGGet precursor sequence |
Structure | 10 20 30 40 50 CGUACAAGUCGGGGCACA--| GA - CA GU U U ACAGC AGACAGA AG CCAGGU C CUC GCAG UAC \ UCUGUCU UC GGUCCA G GGG CGUC GUG U GGGCUCGAGACCACAAUCUG^ G- U AG UG U C AGCAC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Pab-Mir-370_5p* |
mirBase accession | None |
Sequence |
0- CAGGUCACGUCUCUGCAGUUAC -22
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|
Mature sequence | Pab-Mir-370_3p |
mirBase accession | None |
Sequence |
35- GCCUGCUGGGGUGGAACCUGGU -57
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