MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-493

Family name MIR-493 (all species)
Seed UGUACAU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-493
Paralogues
Orthologues Bta-Mir-493  Cfa-Mir-493  Cja-Mir-493  Dno-Mir-493  Eca-Mir-493  Ete-Mir-493  Hsa-Mir-493  Laf-Mir-493  Mml-Mir-493  Mmr-Mir-493  Mmu-Mir-493  Ocu-Mir-493  Pab-Mir-493  Rno-Mir-493 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_111: 942145-942206 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-493)		 Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUGCUUCCGGCUCACUCUGGCUCGAGGGCCUUGUACAUAGUAGGCUUUCAUUCACUCGUGUACUUAUACGGUGAGGGUCUACUGUGUGCCAGGCCCUGUCCAGGCAUCGUGUAGAUGGACGC
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Structure
        10           20        30        40        50        60 
UUGCUUCCGGCUCACUC---|  CU G       U                    CACUCGUG 
                    UGG  C AGGGCCU GUACAUAGUAGGCUUUCAUU        \
                    ACC  G UCCCGGA CGUGUGUCAUCUGGGAGUGG        U
CGCAGGUAGAUGUGCUACGG^  U- -       C                    CAUAUUCA 
120       110       100          90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-493_5p
mirBase accessionMIMAT0047287
Sequence 
0- UUGUACAUAGUAGGCUUUCAUU -22
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Star sequence

Cpo-Mir-493_3p*
mirBase accessionMIMAT0047288
Sequence 
41- UGAGGGUCUACUGUGUGCCAG -62
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