MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-493

Family name MIR-493 (all species)
Seed UGUACAU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-493
Paralogues
Orthologues Bta-Mir-493  Cfa-Mir-493  Cja-Mir-493  Cpo-Mir-493  Dno-Mir-493  Eca-Mir-493  Ete-Mir-493  Hsa-Mir-493  Laf-Mir-493  Mml-Mir-493  Mmr-Mir-493  Mmu-Mir-493  Ocu-Mir-493  Pab-Mir-493 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr6: 133699522-133699583 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-493)		 Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCUGGGCUCAUUCUGGCCUCCAGGGCCUUGUACAUGGUAGGCUUUCAUUCAUUGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCAGGCAUCGUGUAGAUGGACGU
Get precursor sequence
Structure
        10            20        30        40        50        60
GCUUCUGGGCUCAUUCU----|  CUC        U                    CAUUGUU 
                     GGC   CAGGGCCU GUACAUGGUAGGCUUUCAUU       U
                     CCG   GUCCCGGA CGUGUGUCAUCUGGAAGUGG       G
UGCAGGUAGAUGUGCUACGGA^  U--        C                    CUUACAC 
120       110       100          90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
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Mature sequence

Rno-Mir-493_5p
mirBase accessionMIMAT0017217
Sequence 
0- UUGUACAUGGUAGGCUUUCAUU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-493-5p
miRDB: MIMAT0017217
Co-mature sequence

Rno-Mir-493_3p
mirBase accessionMIMAT0003191
Sequence 
40- UGAAGGUCUACUGUGUGCCAGG -62
Get sequence
Proposed targets microrna.org: MIMAT0003191
TargetScanVert: rno-miR-493-3p
miRDB: MIMAT0003191