MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-431

Family name MIR-431 (all species)
Seed GUCUUGC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-431
Paralogues
Orthologues Bta-Mir-431  Cfa-Mir-431  Cja-Mir-431  Cpo-Mir-431  Eca-Mir-431  Ete-Mir-431  Hsa-Mir-431  Laf-Mir-431  Mml-Mir-431  Mmr-Mir-431  Mmu-Mir-431  Ocu-Mir-431  Pab-Mir-431 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr6: 133711444-133711507 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-431)		 Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCACGUCGUUGUCCUGCGCGUCCUGCGAGGUGUCUUGCAGGCCGUCAUGCAGGCCACACUGACGGUAACGUUGCAGGUCGUCUUGCAGGGCUUCUCGCAAGACGACAUCUUCAUCGCCAACGAC
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Structure
        10          20        30        40        50        60 
GCACGUCGUUGUCCUGCG--|   C       U          C  UCA    GGCCACACU 
                    CGUC UGCGAGG GUCUUGCAGG CG   UGCA         G
                    GCAG ACGCUCU CGGGACGUUC GC   ACGU         A
CAGCAACCGCUACUUCUACA^   A       U          U  UGG    UGCAAUGGC 
  120       110       100        90        80        70
Deep sequencing
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CommentThere are Dicer cuts +2 and +3 on both arms.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-431_5p
mirBase accessionMIMAT0001626
Sequence 
0- UGUCUUGCAGGCCGUCAUGCA -21
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Proposed targets microrna.org: MIMAT0001626
TargetScanVert: rno-miR-431
miRDB: MIMAT0001626
Co-mature sequence

Rno-Mir-431_3p
mirBase accessionNone
Sequence 
43- CAGGUCGUCUUGCAGGGCUUC -64
Get sequence