MirGeneDB ID | Ocu-Mir-431 |
Family name |
MIR-431 (all species) |
Seed |
GUCUUGC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-431
Cfa-Mir-431
Cja-Mir-431
Cpo-Mir-431
Eca-Mir-431
Ete-Mir-431
Hsa-Mir-431
Laf-Mir-431
Mml-Mir-431
Mmr-Mir-431
Mmu-Mir-431
Pab-Mir-431
Rno-Mir-431
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
JABWOR010004011.1: 1419561-1419624 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACACGUCGUUGGCCUGCGCGCCCUGCGAGCUGUCUUGCAGGCCGUCACGCAGGCCACUCUGACGGUAACGUUGCAGGUCGUCUUGCAGGGCUUCUCGCAAGGCGACAUCCUCAUCGCCGACGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACACGUCGUUGGCCUGCG--| C CU C UCAC GGCCACUCU
CGCC UGCGAG GUCUUGCAGG CG GCA G
GCGG ACGCUC CGGGACGUUC GC CGU A
CAGCAGCCGCUACUCCUACA^ A UU U UGGA UGCAAUGGC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-431_5p |
mirBase accession | None |
Sequence |
0- UGUCUUGCAGGCCGUCACGCA -21
Get sequence
|
Co-mature sequence |
Ocu-Mir-431_3p |
mirBase accession | None |
Sequence |
43- CAGGUCGUCUUGCAGGGCUUC -64
Get sequence
|