MirGeneDB ID | Pab-Mir-431 |
Family name |
MIR-431 (all species) |
Seed |
GUCUUGC |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-431
Cfa-Mir-431
Cja-Mir-431
Cpo-Mir-431
Eca-Mir-431
Ete-Mir-431
Hsa-Mir-431
Laf-Mir-431
Mml-Mir-431
Mmr-Mir-431
Mmu-Mir-431
Ocu-Mir-431
Rno-Mir-431
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105307145-105307208 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCACGUCGUUGUCCUGCUUGUCCUGCGAGGUGUCUUGCAGGCCGUCAUGCAGGCCACACUGACGGUAACGUUGCAGGUCGUCUUGCAGGGCUUCUCGCAAGACGACAUCCUCAUCACCAACGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCACGUCGUUGUCCUGC--| C U C UCA GGCCACACU
UUGUC UGCGAGG GUCUUGCAGG CG UGCA G
AGCAG ACGCUCU CGGGACGUUC GC ACGU A
CAGCAACCACUACUCCUAC^ A U U UGG UGCAAUGGC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are multiple Dicer cuts ranging from +1 to +3 on the 3p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-431_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGUCUUGCAGGCCGUCAUGCA -21
Get sequence
|
Co-mature sequence |
Pab-Mir-431_3p |
mirBase accession | None |
Sequence |
43- CAGGUCGUCUUGCAGGGCUUC -64
Get sequence
|