Mir-433

MirGeneDB ID

Rno-Mir-433

Family name

MIR-433 (all species)

Seed

UCAUGAU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-433

Paralogues

Orthologues

Bta-Mir-433 Cfa-Mir-433 Cja-Mir-433 Cpo-Mir-433 Dno-Mir-433 Eca-Mir-433 Ete-Mir-433 Hsa-Mir-433 Laf-Mir-433 Mml-Mir-433 Mmr-Mir-433 Mmu-Mir-433 Ocu-Mir-433 Pab-Mir-433

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133712345-133712418 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-433)

Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGAAGAAGACCCAAUGCCCGGGGAGAAGUACGGUGAGCCUGUCAUUAUUCAGAGAGGCUAGAUCCUCUGUGUUGAGAAGGAUCAUGAUGGGCUCCUCGGUGUUCUCCAGGUAGCGGAACCACACCAUGAAGG

Get precursor sequence

Structure

        10           20        30        40        50        60      
GAAGAAGAAGACCCAAU-  --| GG      GUA   U           U    AGAGAGGCUAGAU 
                  GC  CC  GGAGAA   CGG GAGCCUGUCAU AUUC             C
                  CG  GG  CCUCUU   GCU CUCGGGUAGUA UAGG             C
GGAAGUACCACACCAAGG  AU^ A-      GUG   C           C    AAGAGUUGUGUCU 
  130       120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-433_5p*

mirBase accession

MIMAT0017192

Sequence

0- UACGGUGAGCCUGUCAUUAUUC -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-433-5p
miRDB: MIMAT0017192

Mature sequence

Rno-Mir-433_3p

mirBase accession

MIMAT0001628

Sequence

52- AUCAUGAUGGGCUCCUCGGUGU -74

Get sequence

Proposed targets

microrna.org: MIMAT0001628
TargetScanVert: rno-miR-433-3p
miRDB: MIMAT0001628