MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-433

Family name MIR-433 (all species)
Seed UCAUGAU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-433
Paralogues
Orthologues Bta-Mir-433  Cfa-Mir-433  Cja-Mir-433  Dno-Mir-433  Eca-Mir-433  Ete-Mir-433  Hsa-Mir-433  Laf-Mir-433  Mml-Mir-433  Mmr-Mir-433  Mmu-Mir-433  Ocu-Mir-433  Pab-Mir-433  Rno-Mir-433 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_111: 952524-952597 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-433)		 Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAAGAAAAAGACCCAAUGCCCGGGGAGAAGUACGGUGAGCCUGUCAUUAUUCAGAGAGGCUAGAUCCUCUGUGUUGAGAAGGAUCAUGAUGGGCUCCUCGGUGUUCUCCAGGUAGCGGCACCACACCAUGAAGG
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Structure
        10           20        30        40        50        60      
GAAGAAAAAGACCCAAU-  --| GG      GUA   U           U    AGAGAGGCUAGAU 
                  GC  CC  GGAGAA   CGG GAGCCUGUCAU AUUC             C
                  CG  GG  CCUCUU   GCU CUCGGGUAGUA UAGG             C
GGAAGUACCACACCACGG  AU^ A-      GUG   C           C    AAGAGUUGUGUCU 
  130       120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-433_5p*
mirBase accessionMIMAT0047253
Sequence 
0- UACGGUGAGCCUGUCAUUAUUC -22
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Mature sequence

Cpo-Mir-433_3p
mirBase accessionMIMAT0047254
Sequence 
52- AUCAUGAUGGGCUCCUCGGUGU -74
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