Mir-433

MirGeneDB ID

Bta-Mir-433

Family name

MIR-433 (all species)

Seed

UCAUGAU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-433

Paralogues

Orthologues

Cfa-Mir-433 Cja-Mir-433 Cpo-Mir-433 Dno-Mir-433 Eca-Mir-433 Ete-Mir-433 Hsa-Mir-433 Laf-Mir-433 Mml-Mir-433 Mmr-Mir-433 Mmu-Mir-433 Ocu-Mir-433 Pab-Mir-433 Rno-Mir-433

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037348.1: 65779607-65779680 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-433)

Mir-493 NC_037348.1: 65766695-65766757 [+] UCSC Ensembl
Mir-431 NC_037348.1: 65778736-65778799 [+] UCSC Ensembl
Mir-433 NC_037348.1: 65779607-65779680 [+] UCSC Ensembl
Mir-127 NC_037348.1: 65780711-65780766 [+] UCSC Ensembl
Mir-432 NC_037348.1: 65782197-65782265 [+] UCSC Ensembl
Mir-136-v1 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Mir-136-v2 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Mir-370 NC_037348.1: 65808196-65808252 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGAAGAAGACCCAGUGGCCGGGGAGAAGUACGGUGAGCCUGUCAUUGUUCAGAGAGGCUAGAUCCUCCUUGUUGAGAAGGAUCAUGAUGGGCUCCUCGGUGUUCUCCAGGUAGCGGCACCACACCAUGAAGG

Get precursor sequence

Structure

        10           20        30        40        50        60      
GAAGAAGAAGACCCAGUG---|  GG      GUA   U           U    AGAGAGGCUAGAU 
                     GCC  GGAGAA   CGG GAGCCUGUCAU GUUC             C
                     UGG  CCUCUU   GCU CUCGGGUAGUA UAGG             C
GGAAGUACCACACCACGGCGA^  A-      GUG   C           C    AAGAGUUGUUCCU 
  130       120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-433_5p*

mirBase accession

None

Sequence

0- UACGGUGAGCCUGUCAUUGUUC -22

Get sequence

Mature sequence

Bta-Mir-433_3p

mirBase accession

MIMAT0009318

Sequence

52- AUCAUGAUGGGCUCCUCGGUGU -74

Get sequence

Proposed targets

TargetScanVert: bta-miR-433