MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-493

Family name MIR-493 (all species)
Seed UGUACAU
Species Cow (Bos taurus)
MiRBase ID bta-mir-493
Paralogues
Orthologues Cfa-Mir-493  Cpo-Mir-493  Dno-Mir-493  Ete-Mir-493  Hsa-Mir-493  Mml-Mir-493  Mmu-Mir-493  Ocu-Mir-493  Rno-Mir-493 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037348.1: 65766695-65766757 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-493)
Mir-493 NC_037348.1: 65766695-65766757 [+] UCSC Ensembl
Mir-431 NC_037348.1: 65778736-65778799 [+] UCSC Ensembl
Mir-433 NC_037348.1: 65779607-65779680 [+] UCSC Ensembl
Mir-127 NC_037348.1: 65780711-65780766 [+] UCSC Ensembl
Mir-432 NC_037348.1: 65782197-65782265 [+] UCSC Ensembl
Mir-136-v2 NC_037348.1: 65782383-65782439 [+] UCSC Ensembl
Mir-136-v1 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Mir-370 NC_037348.1: 65808196-65808252 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCGGGGCUCCCUCUGGCCCCCAGGGCCUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCAGGCAGCAAGUAAAUGGACAU
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Structure
        10            20        30        40        50        60 
GCUUCGGGGCUCCCUCU----|  CCC        U                    CAUUCGUU 
                     GGC   CAGGGCCU GUACAUGGUAGGCUUUCAUU        \
                     CCG   GUCCCGGA CGUGUGUCAUCUGGAAGUGG        U
UACAGGUAAAUGAACGACGGA^  U--        C                    CUUACACG 
 120       110       100          90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-493_5p

mirBase accessionNone
Sequence
0- UUGUACAUGGUAGGCUUUCAUU -22
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Star sequence

Bta-Mir-493_3p*

mirBase accessionMIMAT0009333
Sequence
41- UGAAGGUCUACUGUGUGCCAGG -63
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Proposed targets TargetScanVert: bta-miR-493