MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-493

Family name MIR-493 (all species)
Seed UGUACAU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-493
Paralogues
Orthologues Bta-Mir-493  Cfa-Mir-493  Cja-Mir-493  Cpo-Mir-493  Dno-Mir-493  Eca-Mir-493  Ete-Mir-493  Hsa-Mir-493  Laf-Mir-493  Mml-Mir-493  Mmr-Mir-493  Ocu-Mir-493  Pab-Mir-493  Rno-Mir-493 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)
chr12: 109580243-109580305 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-493)
Mir-770 chr12: 109563710-109563765 [+] UCSC Ensembl
Mir-673 chr12: 109572004-109572066 [+] UCSC Ensembl
Mir-493 chr12: 109580243-109580305 [+] UCSC Ensembl
Mir-337-as chr12: 109585813-109585873 [-] UCSC Ensembl
Mir-337 chr12: 109585818-109585871 [+] UCSC Ensembl
Mir-540 chr12: 109586085-109586143 [+] UCSC Ensembl
Mir-431 chr12: 109590459-109590522 [+] UCSC Ensembl
Mir-433 chr12: 109591729-109591802 [+] UCSC Ensembl
Mir-127 chr12: 109592854-109592909 [+] UCSC Ensembl
Mir-434 chr12: 109594527-109594586 [+] UCSC Ensembl
Mir-136-v2 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-136-v1 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-370 chr12: 109618270-109618326 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCUGGGCUCACUCUGGCCGCCAGGGCCUUGUACAUGGUAGGCUUUCAUUCAUUUUUUGCACAUUCGGUGAAGGUCCUACUGUGUGCCAGGCCCUGUGCCAGGCAUCGUGUAGAUGGACGU
Get precursor sequence
Structure
        10            20        30        40         50        60
GCUUCUGGGCUCACUCU----|  CGC        U            -        CAUUUUU 
                     GGC   CAGGGCCU GUACAUGGUAGG CUUUCAUU       U
                     CCG   GUCCCGGA CGUGUGUCAUCC GGAAGUGG       G
UGCAGGUAGAUGUGCUACGGA^  U--        C            U        CUUACAC 
 120       110       100          90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-493_5p

mirBase accessionMIMAT0017276
Sequence
0- UUGUACAUGGUAGGCUUUCAUU -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-493-5p
miRDB: MIMAT0017276
Co-mature sequence

Mmu-Mir-493_3p

mirBase accessionMIMAT0004888
Sequence
40- UGAAGGUCCUACUGUGUGCCAGG -63
Get sequence
Proposed targets microrna.org: MIMAT0004888
TargetScanVert: mmu-miR-493-3p
miRDB: MIMAT0004888