Mir-337-as

MirGeneDB ID

Mmu-Mir-337-as

Family name

MIR-337 (all species)

Seed

GAAAGGC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-3544

Paralogues

Mmu-Mir-337

Orthologues

Cja-Mir-337 Eca-Mir-337 Eca-Mir-337-as Hsa-Mir-337-as Laf-Mir-337 Mml-Mir-337-as Ocu-Mir-337-as Pab-Mir-337 Rno-Mir-337 Rno-Mir-337-as

Node of Origin (locus)

Euarchontoglires

Node of Origin (family)

Eutheria

Genome context
(mm10)

chr12: 109585813-109585873 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-337-as)

Mir-770 chr12: 109563710-109563765 [+] UCSC Ensembl
Mir-673 chr12: 109572004-109572066 [+] UCSC Ensembl
Mir-493 chr12: 109580243-109580305 [+] UCSC Ensembl
Mir-337-as chr12: 109585813-109585873 [-] UCSC Ensembl
Mir-337 chr12: 109585818-109585871 [+] UCSC Ensembl
Mir-540 chr12: 109586085-109586143 [+] UCSC Ensembl
Mir-431 chr12: 109590459-109590522 [+] UCSC Ensembl
Mir-433 chr12: 109591729-109591802 [+] UCSC Ensembl
Mir-127 chr12: 109592854-109592909 [+] UCSC Ensembl
Mir-434 chr12: 109594527-109594586 [+] UCSC Ensembl
Mir-136-v2 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-136-v1 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-370 chr12: 109618270-109618326 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGGAGGCCUCACGCGGUUGAAGGGGGUGAAGAAAGGCAUCAUAUAGGAGCUGAAUGGCUGUGCAAUCAACUCCUGCAUGACGCCGUUCCCACCCCCCAACUUCUCACUACACUGGGACCC

Get precursor sequence

Structure

        10        20          30        40        50        60
CCGGAGGCCUCACGCGGUUGAA--|      AA   A   A    A      C  AAUGGC 
                        GGGGGUG  GAA GGC UCAU UAGGAG UG      U
                        CCCCCAC  CUU CCG AGUA GUCCUC AC      G
CCCAGGGUCACAUCACUCUUCAAC^      C-   G   C    C      A  UAACGU 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-337-as_5p

mirBase accession

MIMAT0022353

Sequence

0- AGAAAGGCAUCAUAUAGGAGCUG -23

Get sequence

Proposed targets

TargetScanVert: mmu-miR-3544-5p
miRDB: MIMAT0022353

Co-mature sequence

Mmu-Mir-337-as_3p

mirBase accession

MIMAT0022354

Sequence

39- ACUCCUGCAUGACGCCGUUCCC -61

Get sequence

Proposed targets

TargetScanVert: mmu-miR-3544-3p
miRDB: MIMAT0022354