MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-337

Family name MIR-337 (all species)
Seed UCCUAUA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Cpo-Mir-337-v1  Cpo-Mir-337-v2  Dno-Mir-337-v1  Dno-Mir-337-v2  Eca-Mir-337  Eca-Mir-337-as  Hsa-Mir-337-as  Hsa-Mir-337-v1  Hsa-Mir-337-v2  Laf-Mir-337  Mml-Mir-337-as  Mml-Mir-337-v1  Mml-Mir-337-v2  Mmr-Mir-337-v1  Mmr-Mir-337-v2  Mmu-Mir-337  Mmu-Mir-337-as  Ocu-Mir-337-as  Ocu-Mir-337-v1  Ocu-Mir-337-v2  Pab-Mir-337  Rno-Mir-337  Rno-Mir-337-as 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021924.1: 131682138-131682197 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCGACCGUAGUCAGUAGUUGGGGGGUGGGAACGGCUUCAUACAGGAGUUGAUGCACAGUUAUCCAGCUCCUAUAUGAUGCCUUUCUUCAUCCCUUCAACCACGCGCAGCCCCGGACCC
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Structure
        10         20          30        40        50         
UUGCGACCGUAGUCAGUA-    -       -|   C   U     C       GAUGCAC 
                   GUUG GGGGGUG GGAA GGC UCAUA AGGAGUU       \
                   CAAC UCCCUAC UCUU CCG AGUAU UCCUCGA       A
CCCAGGCCCCGACGCGCAC    U       U^   U   U     A       CCUAUUG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-337_5p* (predicted)

mirBase accessionNone
Sequence
0- GAACGGCUUCAUACAGGAGUU -21
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Mature sequence

Cja-Mir-337_3p

mirBase accessionNone
Sequence
38- CUCCUAUAUGAUGCCUUUCUUC -60
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