Mir-337-v1

MirGeneDB ID

Cpo-Mir-337-v1

Family name

MIR-337 (all species)

Seed

CCUAUAU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-337

Paralogues

Cpo-Mir-337-v2

Orthologues

Cja-Mir-337 Dno-Mir-337-v1 Eca-Mir-337 Hsa-Mir-337-v1 Laf-Mir-337 Mml-Mir-337-v1 Mmr-Mir-337-v1 Mmu-Mir-337 Ocu-Mir-337-v1 Pab-Mir-337 Rno-Mir-337

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_111: 946840-946900 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-337-v1)

Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CGCGGCCCGUAGUCAGGAGUUGGGGGGUGGGAACGGCUUCAUACAGGAGUUGAUUGCACAGUUAUUCAGCUCCUAUAUGAUGCCUUUCCUCAUCCUCUUCAACCACGAGCAGCCCCCGGAC

Get precursor sequence

Structure

        10        20           30        40        50         
CGCGGCCCGUAGUCAGGA    --       -|   C   U     C      UGAUUGCA 
                  GUUG  GGGGGUG GGAA GGC UCAUA AGGAGU        C
                  CAAC  CUCCUAC CCUU CCG AGUAU UCCUCG        A
CAGGCCCCCGACGAGCAC    UU       U^   U   U     A      ACUUAUUG 
 .       110       100        90        80        70        60