MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-337-v1

Family name MIR-337 (all species)
Seed CCUAUAU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-337
Paralogues Cpo-Mir-337-v2 
Orthologues Dno-Mir-337-v1  Hsa-Mir-337-v1  Mml-Mir-337-v1  Mmu-Mir-337  Ocu-Mir-337-v1  Rno-Mir-337 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_111: 946840-946900 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-337-v1)
Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CGCGGCCCGUAGUCAGGAGUUGGGGGGUGGGAACGGCUUCAUACAGGAGUUGAUUGCACAGUUAUUCAGCUCCUAUAUGAUGCCUUUCCUCAUCCUCUUCAACCACGAGCAGCCCCCGGAC
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Structure
        10        20           30        40        50         
CGCGGCCCGUAGUCAGGA    --       -|   C   U     C      UGAUUGCA 
                  GUUG  GGGGGUG GGAA GGC UCAUA AGGAGU        C
                  CAAC  CUCCUAC CCUU CCG AGUAU UCCUCG        A
CAGGCCCCCGACGAGCAC    UU       U^   U   U     A      ACUUAUUG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Cpo-Mir-337-v1_5p*

mirBase accessionMIMAT0047172
Sequence
0- GAACGGCUUCAUACAGGAGU -20
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Mature sequence

Cpo-Mir-337-v1_3p

mirBase accessionMIMAT0047173
Sequence
40- UCCUAUAUGAUGCCUUUCCUC -61
Get sequence