MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-136-v1

Family name MIR-136 (all species)
Seed AUCAUCG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-136
Paralogues Cpo-Mir-136-v2 
Orthologues Bta-Mir-136-v1  Cfa-Mir-136-v1  Cja-Mir-136  Dno-Mir-136-v1  Eca-Mir-136-v1  Ete-Mir-136-v1  Hsa-Mir-136-v1  Laf-Mir-136  Mml-Mir-136-v1  Mmr-Mir-136-v1  Mmu-Mir-136-v1  Ocu-Mir-136-v1  Pab-Mir-136  Rno-Mir-136-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_111: 955349-955404 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-136-v1)		 Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCUCAGCGGUGUUAGAUGAGCCCUCAGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUACGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCCAUCAUUUCGUCGGUUGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CCUCAGCGGUGUUAGAU--|       A        C     UUU          UUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGGA    \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACCU    U
AGGUUGGCUGCUUUACUAC^       A        -     UCU          CGCA 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-136-v1_5p*
mirBase accessionMIMAT0046997
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGGA -23
Get sequence
Mature sequence

Cpo-Mir-136-v1_3p
mirBase accessionMIMAT0046998
Sequence 
34- CAUCAUCGUCUCAAAUGAGUCU -56
Get sequence