Mir-136-v1

MirGeneDB ID

Mmu-Mir-136-v1

Family name

MIR-136 (all species)

Seed

CUCCAUU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-136

Paralogues

Mmu-Mir-136-v2

Orthologues

Bta-Mir-136-v1 Cfa-Mir-136-v1 Cja-Mir-136 Cpo-Mir-136-v1 Dno-Mir-136-v1 Eca-Mir-136-v1 Ete-Mir-136-v1 Hsa-Mir-136-v1 Laf-Mir-136 Mml-Mir-136-v1 Mmr-Mir-136-v1 Ocu-Mir-136-v1 Pab-Mir-136 Rno-Mir-136-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(mm10)

chr12: 109595331-109595386 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-136-v1)

Mir-770 chr12: 109563710-109563765 [+] UCSC Ensembl
Mir-673 chr12: 109572004-109572066 [+] UCSC Ensembl
Mir-493 chr12: 109580243-109580305 [+] UCSC Ensembl
Mir-337-as chr12: 109585813-109585873 [-] UCSC Ensembl
Mir-337 chr12: 109585818-109585871 [+] UCSC Ensembl
Mir-540 chr12: 109586085-109586143 [+] UCSC Ensembl
Mir-431 chr12: 109590459-109590522 [+] UCSC Ensembl
Mir-433 chr12: 109591729-109591802 [+] UCSC Ensembl
Mir-127 chr12: 109592854-109592909 [+] UCSC Ensembl
Mir-434 chr12: 109594527-109594586 [+] UCSC Ensembl
Mir-136-v2 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-136-v1 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-370 chr12: 109618270-109618326 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUCAACGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUAAGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUGUCGUCGGUUGGA

Get precursor sequence

Structure

        10          20        30        40        50        
CUUCAACGGUGUUGGAU--|       G        C     UUU          UUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGGA    \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACCU    U
AGGUUGGCUGCUGUACUAU^       A        -     UCU          CGAA 
    110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-136-v1_5p

mirBase accession

MIMAT0000148

Sequence

0- ACUCCAUUUGUUUUGAUGAUGGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000148
TargetScanVert: mmu-miR-136-5p
miRDB: MIMAT0000148

Co-mature sequence

Mmu-Mir-136-v1_3p

mirBase accession

MIMAT0004532

Sequence

34- CAUCAUCGUCUCAAAUGAGUCU -56

Get sequence

Proposed targets

microrna.org: MIMAT0004532
TargetScanVert: mmu-miR-136-3p
miRDB: MIMAT0004532