MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-136-v1

Family name MIR-136 (all species)
Seed AUCAUCG
Species Cow (Bos taurus)
MiRBase ID bta-mir-136
Paralogues Bta-Mir-136-v2 
Orthologues Cfa-Mir-136-v1  Cja-Mir-136  Cpo-Mir-136-v1  Dno-Mir-136-v1  Eca-Mir-136-v1  Ete-Mir-136-v1  Hsa-Mir-136-v1  Laf-Mir-136  Mml-Mir-136-v1  Mmr-Mir-136-v1  Mmu-Mir-136-v1  Ocu-Mir-136-v1  Pab-Mir-136  Rno-Mir-136-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-136-v1)		 Mir-493 NC_037348.1: 65766695-65766757 [+] UCSC Ensembl
Mir-431 NC_037348.1: 65778736-65778799 [+] UCSC Ensembl
Mir-433 NC_037348.1: 65779607-65779680 [+] UCSC Ensembl
Mir-127 NC_037348.1: 65780711-65780766 [+] UCSC Ensembl
Mir-432 NC_037348.1: 65782197-65782265 [+] UCSC Ensembl
Mir-136-v1 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Mir-136-v2 NC_037348.1: 65782384-65782439 [+] UCSC Ensembl
Mir-370 NC_037348.1: 65808196-65808252 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACGGUGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUACGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCCAUCAUUUCGUCGGAUGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CCACGGUGGUGUUGGAU--|       G        C     UUU          UUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGGA    \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACCU    U
AGGUAGGCUGCUUUACUAC^       A        -     UCU          CGCA 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-136-v1_5p*
mirBase accessionMIMAT0009230
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGGA -23
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Proposed targets TargetScanVert: bta-miR-136
Mature sequence

Bta-Mir-136-v1_3p
mirBase accessionNone
Sequence 
34- CAUCAUCGUCUCAAAUGAGUCU -56
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