MirGeneDB ID | Ete-Mir-136-v1 |
Family name |
MIR-136 (all species) |
Seed |
AUCAUCG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-136-v2
|
Orthologues |
Bta-Mir-136-v1
Cfa-Mir-136-v1
Cja-Mir-136
Cpo-Mir-136-v1
Dno-Mir-136-v1
Eca-Mir-136-v1
Hsa-Mir-136-v1
Laf-Mir-136
Mml-Mir-136-v1
Mmr-Mir-136-v1
Mmu-Mir-136-v1
Ocu-Mir-136-v1
Pab-Mir-136
Rno-Mir-136-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82397135-82397190 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCGCGGCGGUAUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUAUGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUUUCUUCGGUUGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCGCGGCGGUAUUGGAU--| G C UUU UUCU
GAGCCCUC GAGGACUC AUUUG UGAUGAUGGA \
CUUGGGAG CUUCUGAG UAAAC GCUACUACCU U
AGGUUGGCUUCUUUACUAU^ A - UCU CGUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Ete-Mir-136-v1_5p* |
mirBase accession | None |
Sequence |
0- ACUCCAUUUGUUUUGAUGAUGGA -23
Get sequence
|
Mature sequence |
Ete-Mir-136-v1_3p |
mirBase accession | None |
Sequence |
34- CAUCAUCGUCUCAAAUGAGUCU -56
Get sequence
|