Mir-136-v1

MirGeneDB ID

Rno-Mir-136-v1

Family name

MIR-136 (all species)

Seed

AUCAUCG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-136

Paralogues

Rno-Mir-136-v2

Orthologues

Bta-Mir-136-v1 Cfa-Mir-136-v1 Cja-Mir-136 Cpo-Mir-136-v1 Dno-Mir-136-v1 Eca-Mir-136-v1 Ete-Mir-136-v1 Hsa-Mir-136-v1 Laf-Mir-136 Mml-Mir-136-v1 Mmr-Mir-136-v1 Mmu-Mir-136-v1 Ocu-Mir-136-v1 Pab-Mir-136

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chr6: 133716775-133716830 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-136-v1)

Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUCAACGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUAAGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUGUCGUCGGUUGGA

Get precursor sequence

Structure

        10          20        30        40        50        
CUUCAACGGUGUUGGAU--|       G        C     UUU          UUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGGA    \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACCU    U
AGGUUGGCUGCUGUACUAU^       A        -     UCU          CGAA 
    110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-136-v1_5p*

mirBase accession

MIMAT0000842

Sequence

0- ACUCCAUUUGUUUUGAUGAUGGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000842
TargetScanVert: rno-miR-136-5p
miRDB: MIMAT0000842

Mature sequence

Rno-Mir-136-v1_3p

mirBase accession

MIMAT0004733

Sequence

34- CAUCAUCGUCUCAAAUGAGUCU -56

Get sequence

Proposed targets

microrna.org: MIMAT0004733
TargetScanVert: rno-miR-136-3p
miRDB: MIMAT0004733