MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-337

Family name MIR-337 (all species)
Seed GGCGUCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-337
Paralogues Rno-Mir-337-as 
Orthologues Cja-Mir-337  Cpo-Mir-337-v1  Cpo-Mir-337-v2  Dno-Mir-337-v1  Dno-Mir-337-v2  Eca-Mir-337  Eca-Mir-337-as  Hsa-Mir-337-as  Hsa-Mir-337-v1  Hsa-Mir-337-v2  Laf-Mir-337  Mml-Mir-337-as  Mml-Mir-337-v1  Mml-Mir-337-v2  Mmr-Mir-337-v1  Mmr-Mir-337-v2  Mmu-Mir-337  Mmu-Mir-337-as  Ocu-Mir-337-as  Ocu-Mir-337-v1  Ocu-Mir-337-v2  Pab-Mir-337 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr6: 133705948-133706001 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-337)
Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGUGUAGUGAGAAGUUGGGGGGUGGGAACGGCGUCAUGCAGGAGUUGAUUGCACAGCCAUUCAGCUCCUAUAUGAUGCCUUUCUUCACCCCCUUCAACCGCGUGUGGCGUCC
Get precursor sequence
Structure
        10         20         30        40        50      
CCAGUGUAGUGAGAAGUU-        -|   C         C         UUGCA 
                   GGGGGGUG GGAA GGCGUCAUG AGGAGUUGA     C
                   UCCCCCAC UCUU CCGUAGUAU UCCUCGACU     A
CCUGCGGUGUGCGCCAACU        U^   U         A         UACCG 
  110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Drosha cut in murids is shifted +3 and the gene is arm switched relative to the other eutherians.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-337_5p

mirBase accessionMIMAT0017035
Sequence
0- CGGCGUCAUGCAGGAGUUGAUU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-337-5p
miRDB: MIMAT0017035
Star sequence

Rno-Mir-337_3p*

mirBase accessionMIMAT0000577
Sequence
32- UCAGCUCCUAUAUGAUGCCUUU -54
Get sequence
Proposed targets microrna.org: MIMAT0000577
TargetScanVert: rno-miR-337-3p
miRDB: MIMAT0000577