Mir-337-v2

MirGeneDB ID

Cpo-Mir-337-v2

Family name

MIR-337 (all species)

Seed

AACGGCU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-337

Paralogues

Cpo-Mir-337-v1

Orthologues

Cja-Mir-337 Dno-Mir-337-v2 Eca-Mir-337 Hsa-Mir-337-v2 Laf-Mir-337 Mml-Mir-337-v2 Mmr-Mir-337-v2 Mmu-Mir-337 Ocu-Mir-337-v2 Pab-Mir-337 Rno-Mir-337

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_111: 946840-946900 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-337-v2)

Mir-493 scaffold_111: 942145-942206 [+] UCSC
Mir-337-v1 scaffold_111: 946840-946900 [+] UCSC
Mir-337-v2 scaffold_111: 946840-946900 [+] UCSC
Mir-431 scaffold_111: 951653-951716 [+] UCSC
Mir-12073 scaffold_111: 952329-952402 [+] UCSC
Mir-433 scaffold_111: 952524-952597 [+] UCSC
Mir-127 scaffold_111: 953628-953683 [+] UCSC
Mir-432 scaffold_111: 955129-955197 [+] UCSC
Mir-136-v2 scaffold_111: 955349-955404 [+] UCSC
Mir-136-v1 scaffold_111: 955349-955404 [+] UCSC
Mir-370 scaffold_111: 977812-977869 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CGCGGCCCGUAGUCAGGAGUUGGGGGGUGGGAACGGCUUCAUACAGGAGUUGAUUGCACAGUUAUUCAGCUCCUAUAUGAUGCCUUUCCUCAUCCUCUUCAACCACGAGCAGCCCCCGGAC

Get precursor sequence

Structure

        10        20           30        40        50         
CGCGGCCCGUAGUCAGGA    --       -|   C   U     C       GAUUGCA 
                  GUUG  GGGGGUG GGAA GGC UCAUA AGGAGUU       C
                  CAAC  CUCCUAC CCUU CCG AGUAU UCCUCGA       A
CAGGCCCCCGACGAGCAC    UU       U^   U   U     A       CUUAUUG 
 .       110       100        90        80        70        60