MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-337

Family name MIR-337 (all species)
Seed GGCGUCA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-337
Paralogues Mmu-Mir-337-as 
Orthologues Cja-Mir-337  Cpo-Mir-337-v1  Cpo-Mir-337-v2  Dno-Mir-337-v1  Dno-Mir-337-v2  Eca-Mir-337  Eca-Mir-337-as  Hsa-Mir-337-as  Hsa-Mir-337-v1  Hsa-Mir-337-v2  Laf-Mir-337  Mml-Mir-337-as  Mml-Mir-337-v1  Mml-Mir-337-v2  Mmr-Mir-337-v1  Mmr-Mir-337-v2  Ocu-Mir-337-as  Ocu-Mir-337-v1  Ocu-Mir-337-v2  Pab-Mir-337  Rno-Mir-337  Rno-Mir-337-as 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)
chr12: 109585818-109585871 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-337)
Mir-770 chr12: 109563710-109563765 [+] UCSC Ensembl
Mir-673 chr12: 109572004-109572066 [+] UCSC Ensembl
Mir-493 chr12: 109580243-109580305 [+] UCSC Ensembl
Mir-337-as chr12: 109585813-109585873 [-] UCSC Ensembl
Mir-337 chr12: 109585818-109585871 [+] UCSC Ensembl
Mir-540 chr12: 109586085-109586143 [+] UCSC Ensembl
Mir-431 chr12: 109590459-109590522 [+] UCSC Ensembl
Mir-433 chr12: 109591729-109591802 [+] UCSC Ensembl
Mir-127 chr12: 109592854-109592909 [+] UCSC Ensembl
Mir-434 chr12: 109594527-109594586 [+] UCSC Ensembl
Mir-136-v2 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-136-v1 chr12: 109595331-109595386 [+] UCSC Ensembl
Mir-370 chr12: 109618270-109618326 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGUGUAGUGAGAAGUUGGGGGGUGGGAACGGCGUCAUGCAGGAGUUGAUUGCACAGCCAUUCAGCUCCUAUAUGAUGCCUUUCUUCACCCCCUUCAACCGCGUGAGGCCUCC
Get precursor sequence
Structure
        10         20         30        40        50      
CCAGUGUAGUGAGAAGUU-        -|   C         C         UUGCA 
                   GGGGGGUG GGAA GGCGUCAUG AGGAGUUGA     C
                   UCCCCCAC UCUU CCGUAGUAU UCCUCGACU     A
CCUCCGGAGUGCGCCAACU        U^   U         A         UACCG 
  110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe Drosha cut in murids is shifted +3 and the gene is arm switched relative to the other eutherians.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-337_5p

mirBase accessionMIMAT0004644
Sequence
0- CGGCGUCAUGCAGGAGUUGAUU -22
Get sequence
Proposed targets microrna.org: MIMAT0004644
TargetScanVert: mmu-miR-337-5p
miRDB: MIMAT0004644
Star sequence

Mmu-Mir-337_3p*

mirBase accessionMIMAT0000578
Sequence
32- UCAGCUCCUAUAUGAUGCCUUU -54
Get sequence
Proposed targets microrna.org: MIMAT0000578
TargetScanVert: mmu-miR-337-3p
miRDB: MIMAT0000578