MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-673

Family name MIR-673 (all species)
Seed CCGGGAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-673
Paralogues
Orthologues Mmu-Mir-673 
Node of Origin (locus) Muridae
Node of Origin (family) Muridae
Genome context
(rn6)		 chr6: 133691391-133691453 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-673)		 Mir-770 chr6: 133682975-133683030 [+] UCSC Ensembl
Mir-673 chr6: 133691391-133691453 [+] UCSC Ensembl
Mir-493 chr6: 133699522-133699583 [+] UCSC Ensembl
Mir-337-as chr6: 133705943-133706003 [-] UCSC Ensembl
Mir-337 chr6: 133705948-133706001 [+] UCSC Ensembl
Mir-540 chr6: 133706216-133706274 [+] UCSC Ensembl
Mir-431 chr6: 133711444-133711507 [+] UCSC Ensembl
Mir-433 chr6: 133712345-133712418 [+] UCSC Ensembl
Mir-127 chr6: 133713452-133713507 [+] UCSC Ensembl
Mir-136-v2 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-136-v1 chr6: 133716775-133716830 [+] UCSC Ensembl
Mir-370 chr6: 133739928-133739984 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGGAGGUCUGGCUUUGGAGCCUGAGGGGCUCACAGCUCCGGUCCUUGGAGCUCCAGAGAAAAUGUUGCUCCGGGACUGAGUUCUGUGCACCCCCCUUGCCCUCCACAUUCCCCGGGGCUAU
Get precursor sequence
Structure
        10           20        30            40        50        60 
GUGGGAGGUCUGGCUUU---  A  CU      CU--     --|  C      U     UCCAGAG 
                    GG GC  GAGGGG    CACAG  CUC GGUCCU GGAGC       \
                    CC CG  UUCCCC    GUGUC  GAG UCAGGG CCUCG       A
UAUCGGGGCCCCUUACACCU  -  --      CCAC     UU^  -      -     UUGUAAA 
 120       110        100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
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Star sequence

Rno-Mir-673_5p*
mirBase accessionMIMAT0005328
Sequence 
0- CUCACAGCUCCGGUCCUUGGAGC -23
Get sequence
Proposed targets microrna.org: MIMAT0005328
TargetScanVert: rno-miR-673-5p
miRDB: MIMAT0005328
Mature sequence

Rno-Mir-673_3p
mirBase accessionMIMAT0017313
Sequence 
40- UCCGGGACUGAGUUCUGUGCACC -63
Get sequence
Proposed targets TargetScanVert: rno-miR-673-3p
miRDB: MIMAT0017313