MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-136-v1

Family name MIR-136 (all species)
Seed AUCAUCG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-136
Paralogues Cfa-Mir-136-v2 
Orthologues Bta-Mir-136-v1  Cja-Mir-136  Cpo-Mir-136-v1  Dno-Mir-136-v1  Eca-Mir-136-v1  Ete-Mir-136-v1  Hsa-Mir-136-v1  Laf-Mir-136  Mml-Mir-136-v1  Mmr-Mir-136-v1  Mmu-Mir-136-v1  Ocu-Mir-136-v1  Pab-Mir-136  Rno-Mir-136-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr8: 69106615-69106670 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-136-v1)		 Mir-493 chr8: 69094351-69094412 [+] UCSC Ensembl
Mir-433 chr8: 69103838-69103911 [+] UCSC Ensembl
Mir-127 chr8: 69104942-69104997 [+] UCSC Ensembl
Mir-432 chr8: 69106428-69106496 [+] UCSC Ensembl
Mir-136-v1 chr8: 69106615-69106670 [+] UCSC Ensembl
Mir-136-v2 chr8: 69106615-69106670 [+] UCSC Ensembl
Mir-370 chr8: 69132798-69132854 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACGGUGGUGUUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUACGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUUUCGUCGGAUGGA
Get precursor sequence
Structure
        10          20        30        40        50        
CCACGGUGGUGUUGGAU--|       G        C     UUU          UUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGGA    \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACCU    U
AGGUAGGCUGCUUUACUAU^       A        -     UCU          CGCA 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-136-v1_5p*
mirBase accessionMIMAT0006714
Sequence 
0- ACUCCAUUUGUUUUGAUGAUGGA -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-136
miRDB: MIMAT0006714
Mature sequence

Cfa-Mir-136-v1_3p
mirBase accessionNone
Sequence 
34- CAUCAUCGUCUCAAAUGAGUCU -56
Get sequence