MirGeneDB ID | Pab-Mir-493 |
Family name |
MIR-493 (all species) |
Seed |
UGUACAU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Bta-Mir-493
Cfa-Mir-493
Cja-Mir-493
Cpo-Mir-493
Dno-Mir-493
Eca-Mir-493
Ete-Mir-493
Hsa-Mir-493
Laf-Mir-493
Mml-Mir-493
Mmr-Mir-493
Mmu-Mir-493
Ocu-Mir-493
Rno-Mir-493
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105293438-105293499 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUUCAGGGCUCAUUCUGGCCUCCAGGGCUUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCAGGCAUCGUGUAGAUGGACG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUUCAGGGCUCAUUCU---| CUC U CAUUCGUU
GGC CAGGGCUU GUACAUGGUAGGCUUUCAUU \
CCG GUCCCGGA CGUGUGUCAUCUGGAAGUGG U
GCAGGUAGAUGUGCUACGGA^ U-- C CUUACACG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-493_5p |
mirBase accession | None |
Sequence |
0- UUGUACAUGGUAGGCUUUCAUU -22
Get sequence
|
Star sequence |
Pab-Mir-493_3p* |
mirBase accession | None |
Sequence |
41- UGAAGGUCUACUGUGUGCCAG -62
Get sequence
|