Mir-493

MirGeneDB ID

Eca-Mir-493

Family name

MIR-493 (all species)

Seed

UGUACAU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-493b

Paralogues

Orthologues

Bta-Mir-493 Cfa-Mir-493 Cja-Mir-493 Cpo-Mir-493 Dno-Mir-493 Ete-Mir-493 Hsa-Mir-493 Laf-Mir-493 Mml-Mir-493 Mmr-Mir-493 Mmu-Mir-493 Ocu-Mir-493 Pab-Mir-493 Rno-Mir-493

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009171.1: 43167648-43167710 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-493)

Mir-770 CM009171.1: 43150346-43150401 [+] UCSC Ensembl
Mir-493 CM009171.1: 43167648-43167710 [+] UCSC Ensembl
Mir-337 CM009171.1: 43177992-43178051 [+] UCSC Ensembl
Mir-431 CM009171.1: 43183848-43183911 [+] UCSC Ensembl
Mir-433 CM009171.1: 43184725-43184798 [+] UCSC Ensembl
Mir-127 CM009171.1: 43185829-43185884 [+] UCSC Ensembl
Mir-432 CM009171.1: 43187318-43187386 [+] UCSC Ensembl
Mir-136-v2 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-136-v1 CM009171.1: 43187505-43187560 [+] UCSC Ensembl
Mir-370 CM009171.1: 43212467-43212523 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUCGGGGCUCCCUCUGGCCUCCAGGGCCUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUUCCGUGUGCCAGGCUCUGUGCCAGGCAUCAAGUAAAGGGACGU

Get precursor sequence

Structure

        10            20        30        40        50        60 
GCUUCGGGGCUCCCUCU----|  CUC        U        U           CAUUCGUU 
                     GGC   CAGGGCCU GUACAUGG AGGCUUUCAUU        \
                     CCG   GUCUCGGA CGUGUGCC UCUGGAAGUGG        U
UGCAGGGAAAUGAACUACGGA^  U--        C        U           CUUACACG 
 120       110       100          90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-493_5p

mirBase accession

None

Sequence

0- UUGUACAUGGUAGGCUUUCAUU -22

Get sequence

Star sequence

Eca-Mir-493_3p*

mirBase accession

MIMAT0013163

Sequence

41- UGAAGGUCUUCCGUGUGCCAGG -63

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