| MirGeneDB ID | Cja-Mir-493 |
|---|---|
| Family name | MIR-493 (all species) |
| Seed | UGUACAU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-493 Cfa-Mir-493 Cpo-Mir-493 Dno-Mir-493 Eca-Mir-493 Ete-Mir-493 Hsa-Mir-493 Laf-Mir-493 Mml-Mir-493 Mmr-Mir-493 Mmu-Mir-493 Ocu-Mir-493 Pab-Mir-493 Rno-Mir-493 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131672486-131672548 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCUUCGGCGCUCAUUCUGGCCUCCAGGGCUUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCAGGUAUCGUGUAGAGUCCACAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCUUCGGCGCUCAUUCU----| CUC U CAUUCGUU GGC CAGGGCUU GUACAUGGUAGGCUUUCAUU \ CCG GUCCCGGA CGUGUGUCAUCUGGAAGUGG U ACACCUGAGAUGUGCUAUGGA^ U-- C CUUACACG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Cja-Mir-493_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGUACAUGGUAGGCUUUCAUU -22
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|
| Star sequence | Cja-Mir-493_3p* (predicted) |
| mirBase accession | None |
| Sequence |
41- UGAAGGUCUACUGUGUGCCAGG -63
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|
