MirGeneDB ID | Laf-Mir-493 |
Family name |
MIR-493 (all species) |
Seed |
UGUACAC |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-493
Cfa-Mir-493
Cja-Mir-493
Cpo-Mir-493
Dno-Mir-493
Eca-Mir-493
Ete-Mir-493
Hsa-Mir-493
Mml-Mir-493
Mmr-Mir-493
Mmu-Mir-493
Ocu-Mir-493
Pab-Mir-493
Rno-Mir-493
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 75678752-75678809 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUUCAGGUCUCAUUCUGGCCUCCAGGGCCUUGUACACCCUAGGCUUUCAUUCAUUGCACAUCCAGUGAAGGCCUACUGUGUGCCAGGCCCUCGGCGACACACACGCGCCACAGAUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUUCAGGUCUCAUUCUG----| UCC U CC CAUUG
GCC AGGGCCU GUACAC UAGGCUUUCAUU C
CGG UCCCGGA CGUGUG AUCCGGAAGUGA A
CGUAGACACCGCGCACACACAG^ C-- C UC CCUAC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Laf-Mir-493_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUGUACACCCUAGGCUUUCAUU -22
Get sequence
|
Star sequence |
Laf-Mir-493_3p* (predicted) |
mirBase accession | None |
Sequence |
36- UGAAGGCCUACUGUGUGCCAGG -58
Get sequence
|