MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-506-P27a

Family name MIR-506 (all species)
Seed ACCAAGG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-892
Paralogues Cpo-Mir-506-P2a1  Cpo-Mir-506-P2a2  Cpo-Mir-506-P2b  Cpo-Mir-506-P4  Cpo-Mir-506-P5  Cpo-Mir-506-P26a  Cpo-Mir-506-P26b  Cpo-Mir-506-P26c  Cpo-Mir-506-P26d  Cpo-Mir-506-P26e  Cpo-Mir-506-P26f  Cpo-Mir-506-P26g  Cpo-Mir-506-P27b  Cpo-Mir-506-P27c 
Orthologues Laf-Mir-506 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 3931993-3932049 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P27a)		 Mir-506-P27a scaffold_84: 3931993-3932049 [+] UCSC
Mir-506-P27c scaffold_84: 3933561-3933617 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCUGCCUUCAGCGUGCUGUGUGCCACGUCCUAUUCAGAAUGGCCUUGGUCAUUUGGAUUAUAUGUCACCAAGGUCUUUCUGAGUAGAAUAGGGCUCACCAAAUUCUUCAUUUGUAGU
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Structure
        10          20        30        40        50        
UCUGCCUUCAGCGUGCU--|  U   AC  C          U         CAUUUGGA 
                   GUG GCC  GU CUAUUCAGAA GGCCUUGGU        \
                   CAC CGG  UA GAUGAGUCUU CUGGAACCA        U
UGAUGUUUACUUCUUAAAC^  U   GA  A          U         CUGUAUAU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-506-P27a_5p*
mirBase accessionMIMAT0047231
Sequence 
0- UAUUCAGAAUGGCCUUGGUCA -21
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Mature sequence

Cpo-Mir-506-P27a_3p
mirBase accessionMIMAT0047232
Sequence 
35- CACCAAGGUCUUUCUGAGUAGA -57
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