MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-506-P26f

Family name MIR-506 (all species)
Seed ACUUCAC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-509b
Paralogues Cpo-Mir-506-P2a1  Cpo-Mir-506-P2a2  Cpo-Mir-506-P2b  Cpo-Mir-506-P4  Cpo-Mir-506-P5  Cpo-Mir-506-P26a  Cpo-Mir-506-P26b  Cpo-Mir-506-P26c  Cpo-Mir-506-P26d  Cpo-Mir-506-P26e  Cpo-Mir-506-P26g  Cpo-Mir-506-P27a  Cpo-Mir-506-P27b  Cpo-Mir-506-P27c 
Orthologues Laf-Mir-506 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_84: 2748262-2748318 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P26f)
Mir-506-P4 scaffold_84: 2699627-2699683 [+] UCSC
Mir-506-P26a scaffold_84: 2702886-2702945 [+] UCSC
Mir-506-P26b scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-P26c scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-P26d scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-P26e scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-P26f scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-P26g scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a1 scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2a2 scaffold_84: 2763265-2763322 [+] UCSC
Mir-506-P2b scaffold_84: 2771646-2771702 [+] UCSC
Mir-506-P5 scaffold_84: 2797729-2797786 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCAUGCUCCAGCAGGAUGUGUGCAGUACCCUACUUCACAGAAUCUCGAUCAUGUCUAAAUAAAUAUGAUCGAAUCCUAUGAAGUAGAGUAAUGCAUGACACAUACAACAAAGGCUGU
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Structure
        10          20        30        40        50        
UCAUGCUCCAGCAGGAU-  -|    G   C        C  A  C         UCUA 
                  GU GUGCA UAC CUACUUCA AG AU UCGAUCAUG    A
                  CA UACGU AUG GAUGAAGU UC UA AGCUAGUAU    A
UGUCGGAAACAACAUACA  G^    A   A        A  C  -         AAAU 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-506-P26f_5p

mirBase accessionMIMAT0047323
Sequence
0- UACUUCACAGAAUCUCGAUCAUG -23
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Star sequence

Cpo-Mir-506-P26f_3p*

mirBase accessionMIMAT0047324
Sequence
35- UGAUCGAAUCCUAUGAAGUAGA -57
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