MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-506-P26a

Family name MIR-506 (all species)
Seed AACUCCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-12075
Paralogues Cpo-Mir-506-P2a1  Cpo-Mir-506-P2a2  Cpo-Mir-506-P2b  Cpo-Mir-506-P4  Cpo-Mir-506-P5  Cpo-Mir-506-P26b  Cpo-Mir-506-P26c  Cpo-Mir-506-P26d  Cpo-Mir-506-P26e  Cpo-Mir-506-P26f  Cpo-Mir-506-P26g  Cpo-Mir-506-P27a  Cpo-Mir-506-P27b  Cpo-Mir-506-P27c 
Orthologues Laf-Mir-506 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 2702886-2702945 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P26a)		 Mir-506-P4 scaffold_84: 2699627-2699683 [+] UCSC
Mir-506-P26a scaffold_84: 2702886-2702945 [+] UCSC
Mir-506-P26b scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-P26c scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-P26d scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-P26e scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-P26f scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-P26g scaffold_84: 2752734-2752794 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GACAUUCCUAGACAUGCUAUGUUUAUUACACAACUCCAGGAUUCGUCGAUCAUGUGUAAUUAAGUUUGAUCGGCGUCUCCUGAAGUGAAGUAAUACAUGGCACAUGGCACCUAGAUGAUA
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Structure
        10            20        30        40        50         
GACAUUCCUAGACAUGC----|    UU     ACA   C     UU         UGUGUA 
                     UAUGU  AUUAC   ACU CAGGA  CGUCGAUCA      A
                     GUACA  UAAUG   UGA GUCCU  GCGGCUAGU      U
AUAGUAGAUCCACGGUACACG^    --     AAG   A     CU         UUGAAU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-506-P26a_5p
mirBase accessionMIMAT0047451
Sequence 
0- CAACUCCAGGAUUCGUCGAUCA -22
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Star sequence

Cpo-Mir-506-P26a_3p*
mirBase accessionMIMAT0047452
Sequence 
38- AUCGGCGUCUCCUGAAGUGAAG -60
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