MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-506-P26b

Family name MIR-506 (all species)
Seed GAUUGCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-509d
Paralogues Cpo-Mir-506-P2a1  Cpo-Mir-506-P2a2  Cpo-Mir-506-P2b  Cpo-Mir-506-P4  Cpo-Mir-506-P5  Cpo-Mir-506-P26a  Cpo-Mir-506-P26c  Cpo-Mir-506-P26d  Cpo-Mir-506-P26e  Cpo-Mir-506-P26f  Cpo-Mir-506-P26g  Cpo-Mir-506-P27a  Cpo-Mir-506-P27b  Cpo-Mir-506-P27c 
Orthologues Laf-Mir-506 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 2715444-2715500 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P26b)		 Mir-506-P4 scaffold_84: 2699627-2699683 [+] UCSC
Mir-506-P26a scaffold_84: 2702886-2702945 [+] UCSC
Mir-506-P26b scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-P26c scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-P26d scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-P26e scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-P26f scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-P26g scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a1 scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2a2 scaffold_84: 2763265-2763322 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUAUGCUCCAGUCUACUUUGUGCAGUGCUCUCCUUCAGAAAGAUGCAAUCAUUUAUGUUUGAAUAUGAUUGCAUCCUCUGAGGGAGAGCAAGACAUAACAUGUACAACAUAUGAAUC
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Structure
        10          20        30        40        50        
UUAUGCUCCAGUCUACU--|    CAG              AA           UUAUG 
                   UUGUG   UGCUCUCCUUCAGA  GAUGCAAUCAU     U
                   AAUAC   ACGAGAGGGAGUCU  CUACGUUAGUA     U
CUAAGUAUACAACAUGUAC^    AGA              C-           UAAGU 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-506-P26b_5p*
mirBase accessionMIMAT0047327
Sequence 
0- UCCUUCAGAAAGAUGCAAUCAUU -23
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Mature sequence

Cpo-Mir-506-P26b_3p
mirBase accessionMIMAT0047328
Sequence 
35- UGAUUGCAUCCUCUGAGGGAGA -57
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