| MirGeneDB ID | Cpo-Mir-12084 |
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| Family name |
MIR-12084 (all species) |
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| Seed |
GCCUGGG |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-12084
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. porcellus
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| Node of Origin (family) |
C. porcellus
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Genome context
(cavPor3) |
scaffold_65: 1244778-1244837 [+]
UCSC
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Precursor
(pre-Mir +30nt flank) |
UGCCCUUGGGCUGGGAAGCAAACCGCGUCCAGCCUGGGUGACAGCCGGACGGAUCCUGCGCUCUAACGUCGCGGCUGUUGCCCAAGCGUUGGGGUUCUGGUCCUGUCUAUGCCUCCGACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGCCCUUGGGCUGGGAAG--- -| G UCCA C UG - GAUCCUG
CA AACC CG GC UGGG ACAGCCG GACG \
GU UUGG GU CG ACCC UGUCGGC CUGC C
CCAGCCUCCGUAUCUGUCCUG C^ G UG-- A GU G AAUCUCG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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| Mature sequence |
Cpo-Mir-12084_5p |
| mirBase accession | MIMAT0047471 |
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| Sequence |
0- AGCCUGGGUGACAGCCGGACG -21
Get sequence
|
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| Co-mature sequence |
Cpo-Mir-12084_3p |
| mirBase accession | MIMAT0047472 |
|---|
| Sequence |
38- UCGCGGCUGUUGCCCAAGCGUU -60
Get sequence
|
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