MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-430-o5c11

Family name MIR-430 (all species)
Seed AAGUGCU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-427-3
Paralogues Xtr-Mir-430-o4  Xtr-Mir-430-o5a1  Xtr-Mir-430-o5a2  Xtr-Mir-430-o5a3  Xtr-Mir-430-o5a4  Xtr-Mir-430-o5a5  Xtr-Mir-430-o5a6  Xtr-Mir-430-o5a7  Xtr-Mir-430-o5a8  Xtr-Mir-430-o5a9  Xtr-Mir-430-o5a10  Xtr-Mir-430-o5a11  Xtr-Mir-430-o5a12  Xtr-Mir-430-o5a13  Xtr-Mir-430-o5a14  Xtr-Mir-430-o5a15  Xtr-Mir-430-o5a16  Xtr-Mir-430-o5a17  Xtr-Mir-430-o5a18  Xtr-Mir-430-o5a19  Xtr-Mir-430-o5a20  Xtr-Mir-430-o5a21  Xtr-Mir-430-o5a22  Xtr-Mir-430-o5a23  Xtr-Mir-430-o5b  Xtr-Mir-430-o5c1  Xtr-Mir-430-o5c2  Xtr-Mir-430-o5c3  Xtr-Mir-430-o5c4  Xtr-Mir-430-o5c5  Xtr-Mir-430-o5c6  Xtr-Mir-430-o5c7  Xtr-Mir-430-o5c8  Xtr-Mir-430-o5c9  Xtr-Mir-430-o5c10  Xtr-Mir-430-o5c12  Xtr-Mir-430-o5c13  Xtr-Mir-430-o5c14  Xtr-Mir-430-o5c15  Xtr-Mir-430-o5c16  Xtr-Mir-430-o5c17  Xtr-Mir-430-o5c18  Xtr-Mir-430-o5c19  Xtr-Mir-430-o5c20  Xtr-Mir-430-o5c21  Xtr-Mir-430-o5c22  Xtr-Mir-430-o5c23  Xtr-Mir-430-o5c24  Xtr-Mir-430-o5c25  Xtr-Mir-430-o5d1  Xtr-Mir-430-o5d2  Xtr-Mir-430-o5e  Xtr-Mir-430-o5f1  Xtr-Mir-430-o5f2  Xtr-Mir-430-o5g  Xtr-Mir-430-o5h  Xtr-Mir-430-o5j  Xtr-Mir-430-o5k1  Xtr-Mir-430-o5k2  Xtr-Mir-430-o5k3  Xtr-Mir-430-o5k4  Xtr-Mir-430-o5k5  Xtr-Mir-430-o5k6  Xtr-Mir-430-o5k7  Xtr-Mir-430-o5k8  Xtr-Mir-430-o5k9  Xtr-Mir-430-o5k10  Xtr-Mir-430-o5k11  Xtr-Mir-430-o5k12  Xtr-Mir-430-o5k13  Xtr-Mir-430-o5k14  Xtr-Mir-430-o5k15  Xtr-Mir-430-o5k16  Xtr-Mir-430-o5k17  Xtr-Mir-430-o5k18  Xtr-Mir-430-o5k19  Xtr-Mir-430-o5k20  Xtr-Mir-430-o5k21  Xtr-Mir-430-o5k22  Xtr-Mir-430-o5k23  Xtr-Mir-430-o5k24  Xtr-Mir-430-o5k25  Xtr-Mir-430-o5k26  Xtr-Mir-430-o5k27  Xtr-Mir-430-o5l1  Xtr-Mir-430-o5l2  Xtr-Mir-430-o5l3  Xtr-Mir-430-o5l4  Xtr-Mir-430-o5l5  Xtr-Mir-430-o5l6  Xtr-Mir-430-o5l7  Xtr-Mir-430-o5l8  Xtr-Mir-430-o5l9  Xtr-Mir-430-o5l10  Xtr-Mir-430-o5l11  Xtr-Mir-430-o5l12  Xtr-Mir-430-o5l13  Xtr-Mir-430-o5l14  Xtr-Mir-430-o5l15  Xtr-Mir-430-o5l16  Xtr-Mir-430-o5l17  Xtr-Mir-430-o5l18  Xtr-Mir-430-o5l19  Xtr-Mir-430-o5m  Xtr-Mir-430-o5n1  Xtr-Mir-430-o5n2  Xtr-Mir-430-o6  Xtr-Mir-430-o7  Xtr-Mir-430-o8  Xtr-Mir-430-P1  Xtr-Mir-430-P3 
Orthologues Bta-Mir-430-P5  Cja-Mir-430-P5  Cpo-Mir-430-P5  Dno-Mir-430-P5  Eca-Mir-430-P5  Ete-Mir-430-P5  Hsa-Mir-430-P5  Laf-Mir-430-P5  Mml-Mir-430-P5  Mmu-Mir-430-P5c  Ocu-Mir-430-P5  Pab-Mir-430-P5  Rno-Mir-430-P5c 
Node of Origin (locus) X. tropicalis
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr3: 133301534-133301597 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-o5c11)		 Mir-430-o5c2 chr3: 133252131-133252194 [+] UCSC Ensembl
Mir-430-o5a2 chr3: 133252554-133252617 [+] UCSC Ensembl
Mir-430-o5c3 chr3: 133253734-133253797 [+] UCSC Ensembl
Mir-430-o5a3 chr3: 133254161-133254224 [+] UCSC Ensembl
Mir-430-o5c4 chr3: 133255350-133255413 [+] UCSC Ensembl
Mir-430-o5a4 chr3: 133258162-133258225 [+] UCSC Ensembl
Mir-430-o5c5 chr3: 133259351-133259414 [+] UCSC Ensembl
Mir-430-o5a5 chr3: 133259769-133259832 [+] UCSC Ensembl
Mir-430-o5c6 chr3: 133260947-133261010 [+] UCSC Ensembl
Mir-430-o5a6 chr3: 133261370-133261433 [+] UCSC Ensembl
Mir-430-o5c7 chr3: 133262551-133262614 [+] UCSC Ensembl
Mir-430-o5c8 chr3: 133264474-133264537 [+] UCSC Ensembl
Mir-430-o5c9 chr3: 133265655-133265718 [+] UCSC Ensembl
Mir-430-o5a7 chr3: 133266070-133266133 [+] UCSC Ensembl
Mir-430-o5c10 chr3: 133267255-133267318 [+] UCSC Ensembl
Mir-430-o5a8 chr3: 133267668-133267731 [+] UCSC Ensembl
Mir-430-o5c15 chr3: 133268857-133268920 [+] UCSC Ensembl
Mir-430-o5c14 chr3: 133270461-133270524 [+] UCSC Ensembl
Mir-430-o5a9 chr3: 133270884-133270947 [+] UCSC Ensembl
Mir-430-o5c13 chr3: 133272063-133272126 [+] UCSC Ensembl
Mir-430-o5a10 chr3: 133272485-133272548 [+] UCSC Ensembl
Mir-430-o5c12 chr3: 133273665-133273728 [+] UCSC Ensembl
Mir-430-o5c11 chr3: 133301534-133301597 [+] UCSC Ensembl
Mir-430-o5a11 chr3: 133301957-133302020 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAGAUCUUUUUUAAACUGAUUCUGAAGCACCCAAAACGGGGCUCUCUCUUGUGCAUGAAUUAUGGUGAGAAAGUGCUUUCUGUUUUGGGCGUUGUGGACAUCAGAUAUACAACAUGGUAUUG
Get precursor sequence
Structure
        10         20         30        40            50         
UCAAGAUCUUUUUUAAA-     -    A   A           ----|  C    UUGUGCAU 
                  CUGAU UCUG AGC CCCAAAACGGG    GCU UCUC        G
                  GACUA AGGU UUG GGGUUUUGUCU    UGA AGAG        A
GUUAUGGUACAACAUAUA     C    G   C           UUCG^  A    UGGUAUUA 
  120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-430-o5c11_5p*
mirBase accessionNone
Sequence 
0- ACCCAAAACGGGGCUCUCUCU -21
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Mature sequence

Xtr-Mir-430-o5c11_3p
mirBase accessionMIMAT0005566
Sequence 
41- AAAGUGCUUUCUGUUUUGGGCGU -64
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Proposed targets TargetScanVert: xtr-miR-427