Mir-430-P5a

MirGeneDB ID

Mmu-Mir-430-P5a

Family name

MIR-430 (all species)

Seed

CUCAAAC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-290a

Paralogues

Mmu-Mir-430-P1 Mmu-Mir-430-P2 Mmu-Mir-430-P3 Mmu-Mir-430-P4 Mmu-Mir-430-P5b Mmu-Mir-430-P5c Mmu-Mir-430-P6 Mmu-Mir-430-P7a Mmu-Mir-430-P7b Mmu-Mir-430-P7c

Orthologues

Bta-Mir-430-P5 Cja-Mir-430-P5 Cpo-Mir-430-P5 Dno-Mir-430-P5 Eca-Mir-430-P5 Ete-Mir-430-P5 Hsa-Mir-430-P5 Laf-Mir-430-P5 Mml-Mir-430-P5 Ocu-Mir-430-P5 Pab-Mir-430-P5 Rno-Mir-430-P5a Xtr-Mir-430-o5a1 Xtr-Mir-430-o5a2 Xtr-Mir-430-o5a3 Xtr-Mir-430-o5a4 Xtr-Mir-430-o5a5 Xtr-Mir-430-o5a6 Xtr-Mir-430-o5a7 Xtr-Mir-430-o5a8 Xtr-Mir-430-o5a9 Xtr-Mir-430-o5a10 Xtr-Mir-430-o5a11 Xtr-Mir-430-o5a12 Xtr-Mir-430-o5a13 Xtr-Mir-430-o5a14 Xtr-Mir-430-o5a15 Xtr-Mir-430-o5a16 Xtr-Mir-430-o5a17 Xtr-Mir-430-o5a18 Xtr-Mir-430-o5a19 Xtr-Mir-430-o5a20 Xtr-Mir-430-o5a21 Xtr-Mir-430-o5a22 Xtr-Mir-430-o5a23

Node of Origin (locus)

Muridae

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr7: 3218639-3218697 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P5a)

Mir-430-P5a chr7: 3218639-3218697 [+] UCSC Ensembl
Mir-430-P7a chr7: 3218932-3218989 [+] UCSC Ensembl
Mir-430-P5b chr7: 3219200-3219261 [+] UCSC Ensembl
Mir-430-P7b chr7: 3219494-3219550 [+] UCSC Ensembl
Mir-430-P5c chr7: 3220356-3220411 [+] UCSC Ensembl
Mir-430-P7c chr7: 3220655-3220712 [+] UCSC Ensembl
Mir-430-P6 chr7: 3220779-3220837 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUAACGUCUGGACCGCCUCAUCUUGCGGUACUCAAACUAUGGGGGCACUUUUUUUUUUCUUUAAAAAGUGCCGCCUAGUUUUAAGCCCCGCCGGUUGAGAAAACGGCUAUCUGGCACA

Get precursor sequence

Structure

        10          20        30         40        50         
UUUAACGUCUGGACCGC--    U  U    UA  C-|     U  G          UUUU 
                   CUCA CU GCGG  CU  AAACUA GG GGCACUUUUU    \
                   GAGU GG CGCC  GA  UUUGAU CC CCGUGAAAAA    U
ACACGGUCUAUCGGCAAAA    U  C    CC  AU^     -  G          UUUC 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-430-P5a_5p

mirBase accession

MIMAT0000366

Sequence

0- ACUCAAACUAUGGGGGCACUUUUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000366
TargetScanVert: mmu-miR-290a-5p
miRDB: MIMAT0000366

Star sequence

Mmu-Mir-430-P5a_3p*

mirBase accession

MIMAT0004572

Sequence

35- AAAGUGCCGCCUAGUUUUAAGCCC -59

Get sequence

Proposed targets

microrna.org: MIMAT0004572
TargetScanVert: mmu-miR-290a-3p
miRDB: MIMAT0004572