MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-430-o5o1

Family name MIR-430 (all species)
Seed CCCAAAA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xla-Mir-430-o5o2  Xla-Mir-430-o5p1  Xla-Mir-430-o5p2  Xla-Mir-430-o5q1  Xla-Mir-430-o5q2  Xla-Mir-430-o5r  Xla-Mir-430-o5s  Xla-Mir-430-o6a  Xla-Mir-430-o6b  Xla-Mir-430-o7a  Xla-Mir-430-o7b  Xla-Mir-430-o8a  Xla-Mir-430-o8b  Xla-Mir-430-o9  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xla-Mir-430-P3a  Xla-Mir-430-P3b 
Orthologues Bta-Mir-430-P5  Cja-Mir-430-P5  Cpo-Mir-430-P5  Dno-Mir-430-P5  Eca-Mir-430-P5  Ete-Mir-430-P5  Hsa-Mir-430-P5  Laf-Mir-430-P5  Mml-Mir-430-P5  Ocu-Mir-430-P5  Pab-Mir-430-P5 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 217936613-217936674 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUUUUCAACGCAAAGCCAAUUUUACAUUACCCAAAACUAGGCCCUCUCUUGUGUUUCAAUUAUUAAGAAAGUGCUUUUUGUUUUGGGCAUUUUAUGUUUUGGGCACUCCAUUCAGAAAUC
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Structure
        10         20        30            40          50         
AAUUUUUCAACGCAAAG-    UUUU    UA----        U--|   C  C   UGUGUUU 
                  CCAA    ACAU      CCCAAAAC   AGGC CU UCU       C
                  GGUU    UGUA      GGGUUUUG   UUCG GA AGA       A
CUAAAGACUUACCUCACG    U---    UUUUAC        UUU^   U  A   AUUAUUA 
120       110       100           90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-430-o5o1_5p
mirBase accessionNone
Sequence 
0- ACCCAAAACUAGGCCCUCUCU -21
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Star sequence

Xla-Mir-430-o5o1_3p*
mirBase accessionNone
Sequence 
39- AAAGUGCUUUUUGUUUUGGGCAU -62
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