Mir-430-P4

MirGeneDB ID

Gga-Mir-430-P4

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-302d

Paralogues

Gga-Mir-430-P1 Gga-Mir-430-P2 Gga-Mir-430-P3

Orthologues

Ami-Mir-430-P4 Bta-Mir-430-P4 Cfa-Mir-430-P4 Cja-Mir-430-P4 Cli-Mir-430-P4 Cmi-Mir-430-P4 Cpi-Mir-430-P4 Cpo-Mir-430-P4 Dno-Mir-430-P4 Eca-Mir-430-P4 Ete-Mir-430-P4 Hsa-Mir-430-P4 Laf-Mir-430-P4 Mdo-Mir-430-P4 Mml-Mir-430-P4 Mmr-Mir-430-P4 Mmu-Mir-430-P4 Oan-Mir-430-P4 Ocu-Mir-430-P4 Pab-Mir-430-P4 Rno-Mir-430-P4 Spt-Mir-430-P4 Sto-Mir-430-P4 Tgu-Mir-430-P4 Xla-Mir-430-o4a Xla-Mir-430-o4b Xtr-Mir-430-o4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

4: 57085084-57085144 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P4)

Mir-430-P1 4: 57084186-57084246 [+] UCSC Ensembl
Mir-430-P2 4: 57084446-57084502 [+] UCSC Ensembl
Mir-430-P3 4: 57084749-57084807 [+] UCSC Ensembl
Mir-430-P4 4: 57085084-57085144 [+] UCSC Ensembl
Mir-92-P2a 4: 57085223-57085282 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUAGUAAUACAGACGGCAAGGACCCCCUCAACUUUAACAUGGAGGUACUUGCUGGACACCUGAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGGUGUCUCCUGAAACCCAACCGAAGAGGA

Get precursor sequence

Structure

        10         20         30        40        50          
GUAGUAAUACAGACGGCA-    CCC-| U     UU                  GGACAC 
                   AGGA    CC CAACU  AACAUGGAGGUACUUGCU      \
                   UCCU    GG GUUGA  UUGUACCUUCGUGAAUGA      C
AGGAGAAGCCAACCCAAAG    CUGU^ U     UU                  AAAAGU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-430-P4_5p*

mirBase accession

None

Sequence

0- ACUUUAACAUGGAGGUACUUGCU -23

Get sequence

Mature sequence

Gga-Mir-430-P4_3p

mirBase accession

MIMAT0003360

Sequence

38- UAAGUGCUUCCAUGUUUUAGUUG -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-302d
miRDB: MIMAT0003360