MirGeneDB ID | Sto-Mir-430-P4 |
Family name |
MIR-430 (all species) |
Seed |
CUCUAAC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-430-P1
Sto-Mir-430-P2
Sto-Mir-430-P3
|
Orthologues |
Ami-Mir-430-P4
Bta-Mir-430-P4
Cfa-Mir-430-P4
Cja-Mir-430-P4
Cli-Mir-430-P4
Cmi-Mir-430-P4
Cpi-Mir-430-P4
Cpo-Mir-430-P4
Dno-Mir-430-P4
Eca-Mir-430-P4
Ete-Mir-430-P4
Gga-Mir-430-P4
Hsa-Mir-430-P4
Laf-Mir-430-P4
Mdo-Mir-430-P4
Mml-Mir-430-P4
Mmr-Mir-430-P4
Mmu-Mir-430-P4
Oan-Mir-430-P4
Ocu-Mir-430-P4
Pab-Mir-430-P4
Rno-Mir-430-P4
Spt-Mir-430-P4
Tgu-Mir-430-P4
Xla-Mir-430-o4a
Xla-Mir-430-o4b
Xtr-Mir-430-o4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01002990.1: 216824-216879 [-]
|
Precursor (pre-Mir +30nt flank) |
AGUCUUUUCCAAUGGAAUUGUGAAGUGGAGCCUCUAACAUGUGAGAACUUGCUCUCAUUGAAGUAAGUGCUCGCUUGUUGGGAUUUCUACUGCUCAACAGUACAACUUUUGAGAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUCUUUUCCAAUGGAA--| UGA CC U A UCUC
UUG AGUGGAG UCUAACA GUGAG ACUUGC A
AAC UCAUCUU GGGUUGU CGCUC UGAAUG U
CAAGAGUUUUCAACAUGAC^ UCG UA U G AAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Sto-Mir-430-P4_5p |
mirBase accession | None |
Sequence |
0- CCUCUAACAUGUGAGAACUUGC -22
Get sequence
|
Co-mature sequence |
Sto-Mir-430-P4_3p |
mirBase accession | None |
Sequence |
33- UAAGUGCUCGCUUGUUGGGAUUU -56
Get sequence
|