MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-430-P4

Family name MIR-430 (all species)
Seed AAGUGCU
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-430-o44  Laf-Mir-430-P1  Laf-Mir-430-P2  Laf-Mir-430-P3  Laf-Mir-430-P5  Laf-Mir-430-P7 
Orthologues Ami-Mir-430-P4  Bta-Mir-430-P4  Cfa-Mir-430-P4  Cja-Mir-430-P4  Cli-Mir-430-P4  Cmi-Mir-430-P4  Cpi-Mir-430-P4  Cpo-Mir-430-P4  Dno-Mir-430-P4  Eca-Mir-430-P4  Ete-Mir-430-P4  Gga-Mir-430-P4  Hsa-Mir-430-P4  Mdo-Mir-430-P4  Mml-Mir-430-P4  Mmr-Mir-430-P4  Mmu-Mir-430-P4  Oan-Mir-430-P4  Ocu-Mir-430-P4  Pab-Mir-430-P4  Rno-Mir-430-P4  Spt-Mir-430-P4  Sto-Mir-430-P4  Tgu-Mir-430-P4  Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xtr-Mir-430-o4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010041.1: 21847588-21847647 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGUCUAAUCUGUAAAGGGACCCCCUCUACUUAAACAUGGAGGCACUUGCUGUGACAUACUAAAAUAAGUGCUUCCAUGUUUGAGUGUGGUGAAUCCUAACAAAUCUUCAAUUGCUUU
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Structure
        10          20         30        40        50         
UGUUGUCUAAUCUGUAAA--    CCC-| UC                      CUGUGAC 
                    GGGA    CC  UACUUAAACAUGGAGGCACUUG       A
                    UCCU    GG  GUGAGUUUGUACCUUCGUGAAU       U
UUUCGUUAACUUCUAAACAA    AAGU^ U-                      AAAAUCA 
.       110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Wh
Star sequence

Laf-Mir-430-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUAAACAUGGAGGCACUUGCU -23
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Mature sequence

Laf-Mir-430-P4_3p (predicted)

mirBase accessionNone
Sequence
37- UAAGUGCUUCCAUGUUUGAGUGU -60
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