MirGeneDB ID | Cmi-Mir-430-P4 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-430-o36
Cmi-Mir-430-P1
Cmi-Mir-430-P2
Cmi-Mir-430-P3
|
Orthologues |
Ami-Mir-430-P4
Bta-Mir-430-P4
Cfa-Mir-430-P4
Cja-Mir-430-P4
Cli-Mir-430-P4
Cpi-Mir-430-P4
Cpo-Mir-430-P4
Dno-Mir-430-P4
Eca-Mir-430-P4
Ete-Mir-430-P4
Gga-Mir-430-P4
Hsa-Mir-430-P4
Laf-Mir-430-P4
Mdo-Mir-430-P4
Mml-Mir-430-P4
Mmr-Mir-430-P4
Mmu-Mir-430-P4
Oan-Mir-430-P4
Ocu-Mir-430-P4
Pab-Mir-430-P4
Rno-Mir-430-P4
Spt-Mir-430-P4
Sto-Mir-430-P4
Tgu-Mir-430-P4
Xla-Mir-430-o4a
Xla-Mir-430-o4b
Xtr-Mir-430-o4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635904.1: 4107448-4107504 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGCCGUUUUGUCACGUCCUGUGUUUUAGAGCCUCUAACAUGUGAGUUCUUGCAACCUUACUAAGUAAGUGCUCCCAUGUUGGGAUUUCUAGAGCAUAGACAAAUUGUAAAACUUCUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCCGUUUUGUCACGUC--| CC U U AACCU
CUGUGUUUUAGAG UCUAACAUG GAGU CUUGC \
GAUACGAGAUCUU GGGUUGUAC CUCG GAAUG U
UUCUUCAAAAUGUUAAACA^ UA C U AAUCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-430-P4_5p* |
mirBase accession | None |
Sequence |
0- CCUCUAACAUGUGAGUUCUUGCA -23
Get sequence
|
Mature sequence |
Cmi-Mir-430-P4_3p |
mirBase accession | None |
Sequence |
34- UAAGUGCUCCCAUGUUGGGAUUU -57
Get sequence
|