MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-430-P3

Family name MIR-430 (all species)
Seed AAGUGCU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-430-o36  Cmi-Mir-430-P1  Cmi-Mir-430-P2  Cmi-Mir-430-P4 
Orthologues Aca-Mir-430-P3  Ami-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cja-Mir-430-P3  Cli-Mir-430-P3  Cpi-Mir-430-P3  Cpo-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3a1  Dre-Mir-430-o3a2  Dre-Mir-430-o3a3  Dre-Mir-430-o3a4  Dre-Mir-430-o3a5  Dre-Mir-430-o3a6  Dre-Mir-430-o3a7  Dre-Mir-430-o3a8  Dre-Mir-430-o3a9  Dre-Mir-430-o3a10  Dre-Mir-430-o3a11  Dre-Mir-430-o3a12  Dre-Mir-430-o3a13  Dre-Mir-430-o3a14  Dre-Mir-430-o3a15  Dre-Mir-430-o3a16  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Eca-Mir-430-P3  Ete-Mir-430-P3  Gga-Mir-430-P3  Gja-Mir-430-P3  Hsa-Mir-430-P3  Laf-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmr-Mir-430-P3  Mmu-Mir-430-P3  Neu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Pab-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Tgu-Mir-430-P3  Xla-Mir-430-P3a  Xla-Mir-430-P3b  Xtr-Mir-430-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635904.1: 4107569-4107628 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGCCGGAUGUUUUGAGCUGUGCCAAGAGCUCCCAACAUGCUAGCACAUGCUGUGUAUUGCUCUAGUAAGUGCUUUUAUGUUGGGAUUUCUGGAGUCAAAUGAUCUUAUUGUGCACCAU
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Structure
        10          20         30        40        50         
GUUGCCGGAUGUUUUGAGC--  UG-|  A   C          CU     A    GUGUA 
                     UG   CCA GAG UCCCAACAUG  AGCAC UGCU     U
                     AC   GGU CUU AGGGUUGUAU  UCGUG AUGA     U
UACCACGUGUUAUUCUAGUAA  UGA^  -   U          UU     A    UCUCG 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-430-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- CUCCCAACAUGCUAGCACAUGCU -23
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Mature sequence

Cmi-Mir-430-P3_3p

mirBase accessionNone
Sequence
37- UAAGUGCUUUUAUGUUGGGAUUU -60
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