| MirGeneDB ID | Cmi-Mir-430-o36 |
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| Family name |
MIR-430 (all species) |
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| Seed |
AAGUGCU |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-430-P1
Cmi-Mir-430-P2
Cmi-Mir-430-P3
Cmi-Mir-430-P4
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| Orthologues |
Hsa-Mir-430-P36
Mml-Mir-430-P36a1
Mml-Mir-430-P36a2
Mml-Mir-430-P36b
Mml-Mir-430-P36c
Pab-Mir-430-P36
Pbv-Mir-430-o36
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| Node of Origin (locus) |
C. milii
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
AAVX02048183.1: 1645-1704 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCGAACUGCUGUAGAUUAAAGGCAAAUGUUACCUGAACAGGAGCAUUUUCUCUUAUGUGUUUUUUGGUAAGUGCUACCUUGUUUGGGCGACAUUUACCUGACCAAACCUUCUUUCCAACU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCGAACUGCUGUAGAUUAA-- C UA UG - - -| UCUUAUG
AGG AAAUGU CC AAC AGG AGCAUUU UC \
UCC UUUACA GG UUG UCC UCGUGAA GG U
UCAACCUUUCUUCCAAACCAG A GC GU U A U^ UUUUUUG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | This appears to be one of many clustered Mir-430 miRNAs but is the only member with reads in this data set. |
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-430-o36_5p* |
| mirBase accession | None |
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| Sequence |
0- ACCUGAACAGGAGCAUUUUCU -21
Get sequence
|
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| Mature sequence |
Cmi-Mir-430-o36_3p |
| mirBase accession | None |
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| Sequence |
37- UAAGUGCUACCUUGUUUGGGCGA -60
Get sequence
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