MirGeneDB ID | Pbv-Mir-430-o36 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
|
Paralogues |
Pbv-Mir-430-o37
Pbv-Mir-430-o38
Pbv-Mir-430-o39
|
Orthologues |
Cmi-Mir-430-o36
Hsa-Mir-430-P36
Mml-Mir-430-P36a1
Mml-Mir-430-P36a2
Mml-Mir-430-P36b
Mml-Mir-430-P36c
Pab-Mir-430-P36
|
Node of Origin (locus) |
P. bivittatus
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE954489.1: 53193-53254 [+]
|
Precursor (pre-Mir +30nt flank) |
AUCUUGACCAAAAGCGGCCUCCUGAAGCCCACGCAGACAGUGGCACUUUCUUGUAGUAAUAAAUUCAAUUAAGUGCUAUAUUGUUUGUGUGGGAUUUGGGCCUGGCGGAGCAACAAGUCUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCUUGACCAAAAGCGGCCU-- UG G --| UCUUGUAGUA
CC AA CCCACGCAGACA GUGGCACUU A
GG UU GGGUGUGUUUGU UAUCGUGAA U
UUUCUGAACAACGAGGCGGUCC GU A UA^ UUAACUUAAA
120 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Pbv-Mir-430-o36_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACGCAGACAGUGGCACUUUCU -21
Get sequence
|
Mature sequence |
Pbv-Mir-430-o36_3p (predicted) |
mirBase accession | None |
Sequence |
39- UAAGUGCUAUAUUGUUUGUGUGG -62
Get sequence
|