MirGeneDB ID | Pbv-Mir-430-o37 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
|
Paralogues |
Pbv-Mir-430-o36
Pbv-Mir-430-o38
Pbv-Mir-430-o39
|
Orthologues |
Hsa-Mir-430-P37a
Hsa-Mir-430-P37b
Hsa-Mir-430-P37c
Pab-Mir-430-P37a
Pab-Mir-430-P37b
Pab-Mir-430-P37c
|
Node of Origin (locus) |
P. bivittatus
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE954489.1: 53544-53603 [+]
|
Precursor (pre-Mir +30nt flank) |
GGAGCUUCCAUCUCUCACUGACUGAGCCUUGCCCAGACAUGGGCACUUUUCUUUUUUUCUAAUCUGGAAAGUGCUUCAUUGUUUGGGUGAGGCUCUGGUUCAGGUUCCCUCUAAAUUGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGCUUCCAUCUCUCACU- - UG - -| UUUUUU
GACU GAGCCU CCCAGAC AUG GGCACUUUUC U
UUGG CUCGGA GGGUUUG UAC UCGUGAAAGG C
AGGUUAAAUCUCCCUUGGAC U GU U U^ UCUAAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pbv-Mir-430-o37_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCCCAGACAUGGGCACUUUUC -21
Get sequence
|
Mature sequence |
Pbv-Mir-430-o37_3p |
mirBase accession | None |
Sequence |
37- AAAGUGCUUCAUUGUUUGGGUGA -60
Get sequence
|