MirGeneDB ID | Pbv-Mir-430-o39 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
|
Paralogues |
Pbv-Mir-430-o36
Pbv-Mir-430-o37
Pbv-Mir-430-o38
|
Orthologues |
Hsa-Mir-430-P39
Mml-Mir-430-P39
Pab-Mir-430-P39
|
Node of Origin (locus) |
P. bivittatus
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE954489.1: 53802-53862 [+]
|
Precursor (pre-Mir +30nt flank) |
UUUGCUGCACAACCUUCCUAGGUGGGCACUGCUCAAACUUUAGCACUUUCCUGUUCAGCCACUUAGGGUAAGUGCUACACUGUUUGGGUAGCUCCCAGCCAGGCUUUCCAAGUGUUUUAUG
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|
Structure | 10 20 30 40 50
UUUGCUGCACAACCUUC-- A - CA UU-- -| UGUUCA
CU GG UGGG CUGCUCAAAC UAGCACUU UCC G
GA CC ACCC GAUGGGUUUG AUCGUGAA GGG C
GUAUUUUGUGAACCUUUCG - G UC UCAC U^ AUUCAC
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Pbv-Mir-430-o39_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCUCAAACUUUAGCACUUUCC -21
Get sequence
|
Mature sequence |
Pbv-Mir-430-o39_3p (predicted) |
mirBase accession | None |
Sequence |
38- UAAGUGCUACACUGUUUGGGUAG -61
Get sequence
|