MirGeneDB 3.0

MirGeneDB ID

Gja-Mir-430-P3

Family name MIR-430 (all species)
Seed AAGUGCU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-430-o40  Gja-Mir-430-o41 
Orthologues Aca-Mir-430-P3  Ami-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cja-Mir-430-P3  Cli-Mir-430-P3  Cmi-Mir-430-P3  Cpi-Mir-430-P3  Cpo-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3a1  Dre-Mir-430-o3a2  Dre-Mir-430-o3a3  Dre-Mir-430-o3a4  Dre-Mir-430-o3a5  Dre-Mir-430-o3a6  Dre-Mir-430-o3a7  Dre-Mir-430-o3a8  Dre-Mir-430-o3a9  Dre-Mir-430-o3a10  Dre-Mir-430-o3a11  Dre-Mir-430-o3a12  Dre-Mir-430-o3a13  Dre-Mir-430-o3a14  Dre-Mir-430-o3a15  Dre-Mir-430-o3a16  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Eca-Mir-430-P3  Ete-Mir-430-P3  Gga-Mir-430-P3  Hsa-Mir-430-P3  Laf-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmr-Mir-430-P3  Mmu-Mir-430-P3  Neu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Pab-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Tgu-Mir-430-P3  Xla-Mir-430-P3a  Xla-Mir-430-P3b  Xtr-Mir-430-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015166434.1: 930789-930847 [+]
Precursor
(pre-Mir +30nt flank)
GUGUCAUCUCUUGAUAAAGGACCACCCACUACUUUAAUAUGGAAGUACUUGUUUUGUUCUUUUUAAAAAGUGCUUGCAUGUUUUAGUGAUGGCAAAUCCUAAUUAAAUCGUCUAAACAU
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Structure
        10          20        30        40        50         
GUGUCAUCUCUUGAUAA--|   CCAC   C    UU      G        GUUUUGUU 
                   AGGA    CCA UACU  AAUAUG AAGUACUU        \
                   UCCU    GGU GUGA  UUGUAC UUCGUGAA        C
UACAAAUCUGCUAAAUUAA^   AAAC   A    UU      G        AAAUUUUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Star sequence

Gja-Mir-430-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUUAAUAUGGAAGUACUUGUU -23
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Mature sequence

Gja-Mir-430-P3_3p (predicted)

mirBase accessionNone
Sequence
36- AAAGUGCUUGCAUGUUUUAGUGA -59
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